Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12263g00001 ATGAATCACAATAGAYCAGATGAACATTCTGAGACAAAACACRATGTTCATCATAGTTATCAGAAGAATCACAATATATCAGAAGAATCTCACGAGACTAATCATTCTGAGACAAAACACAGCGTTCATAGTTATCCAAGTTCGGGAAACAATTCGCCAACTTATTCCAAAAAGGCGAATCAAGAAGGAAAAGGTGCATTCACAAATGAATATTCAGCAAGTGAAGCTACTAAAGATATGGATCAAGTTTATAAAACCGATGAAAAATTTACAAATAAAACTCGACCACAGAAAATAAGTCCACCAAACAAAAACATTTCTGATGCTTTTACAAAACAAAGTCCAAGGACAAAGATGCCTACAAATGCTGATCCTCCAACTCCAGGAATTTCAAAGGGTATGCCTACTCATACAAAGAACAACAGTCAAAGTGGACCCGGAAGTGGAACTAGCTCGCGCAGCGACAGTTTAGAGAGCACAAGTTGTTCTTCAAACATTAGGCCACATACTGGTGGTGATGTAAGGTGGGATGCAATTAACATGGCTTTGAAAAATGGTCCTCTTAATCTTAGCCATTTTCGGCTTCTTAAGCGTATCGGTTATGGAGACATTGGAAGTGTGTATCTTGTTGAACTTAAAGGAACTGACGCTCATTTTGCGATGAAAGTAATGGACAAGGCTGCTCTTATAAGTAGAAACAAGCTTCTTAGATCACAAACTGAAAGGGAGATTCTTGGTCTTCTTGATCACCCCTTTTTGCCTACTTTGTATTCTTACTTTGAAACTGATAAGTTTTACTGTCTCGTTATGGAGTACTGTAGTGGCGGTGATCTTCATTCACTTCGACAGAAACAACCAAATAAGTGTTTCACTGAAGAAGCTGCAAGACTTTACTTACCTCCCAGCCGAACTCTAGATTACCGGGAGGACCTTTCCCTGGGAACCAGAGGGTTAACGCCAAAAAAAAAAACCTATGTAGCACAAAAATTCATATTGGTGGCTTATCCGGTGTCCAACACATGTCAGTTTCTGACACGACCCGAAAATTGA 1050 0.3924 MNHNRXDEHSETKHBVHHSYQKNHNISEESHETNHSETKHSVHSYPSSGNNSPTYSKKANQEGKGAFTNEYSASEATKDMDQVYKTDEKFTNKTRPQKISPPNKNISDAFTKQSPRTKMPTNADPPTPGISKGMPTHTKNNSQSGPGSGTSSRSDSLESTSCSSNIRPHTGGDVRWDAINMALKNGPLNLSHFRLLKRIGYGDIGSVYLVELKGTDAHFAMKVMDKAALISRNKLLRSQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEYCSGGDLHSLRQKQPNKCFTEEAARLYLPPSRTLDYREDLSLGTRGLTPKKKTYVAQKFILVAYPVSNTCQFLTRPEN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12263g00001 349 Gene3D Phosphorylase Kinase; domain 1 187 311 - -
Trme12263g00001 349 FunFam Serine/threonine-protein kinase AGC1-5 191 276 - -
Trme12263g00001 349 MobiDBLite consensus disorder prediction 1 39 - -
Trme12263g00001 349 MobiDBLite consensus disorder prediction 133 168 - -
Trme12263g00001 349 MobiDBLite consensus disorder prediction 80 94 - -
Trme12263g00001 349 MobiDBLite consensus disorder prediction 95 120 - -
Trme12263g00001 349 MobiDBLite consensus disorder prediction 1 169 - -
Trme12263g00001 349 ProSiteProfiles Protein kinase domain profile. 193 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12263g00001 349 PANTHER FLIPPASE KINASE 1-RELATED 17 298 - -
Trme12263g00001 349 Pfam Protein kinase domain 194 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12263g00001 349 SMART serkin_6 193 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12263g00001 349 SUPERFAMILY Protein kinase-like (PK-like) 182 299 IPR011009 -
Trme12263g00001 349 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12263g00001 Trme-Chr12263 196 1312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12263g00001 149 343 AGC Kinase Gene Family AT3G12690 60.606 2.01e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme12263g00001 Pkinase 1.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12263g00001 - - vvo:131637783 387.882