Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122558g00001 ATGGCAGGAAACCAGAAACAATCTTCATCTCAAATGGTGAAGCCTAAGAGACTCTTCTCTCCGGATGATGAAATAATTCTTGTCAATGGCCTCCTAGATTTTAAATCTAGAACAGGCATTGATCCGACGAAAATATTAAACGTGTTTTACAACGCACATAAGCATTCGGTTAGCGTCAAAACTACTACACAAAAGCAATTTCGTGATAAGATTTGTAAACTTAAGCAGAAATACAAGGAAAATCTGAAAAAGAAAAAGCAAGGGTCTCTCATTTTCGCTGATCGTCATGAGGAGAATCTATTTGAACTTTCTAATGAGTTTTGGGGAGGAGAAAATGGAGCTGATAATATGCGCATGAATGTGTTGAAGAGGGCAGAGTTGGATAGAAGATGTGTGCAGTTGAAAGTTCAAGAGGAGAAACTGCGTCTCCAACGCGCGTTGTTAGTTGAAGAACATGTT 459 0.3878 MAGNQKQSSSQMVKPKRLFSPDDEIILVNGLLDFKSRTGIDPTKILNVFYNAHKHSVSVKTTTQKQFRDKICKLKQKYKENLKKKKQGSLIFADRHEENLFELSNEFWGGENGADNMRMNVLKRAELDRRCVQLKVQEEKLRLQRALLVEEHV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122558g00001 153 PANTHER BNAANNG10740D PROTEIN-RELATED 7 151 IPR007592 GO:0006355
Trme122558g00001 153 Coils Coil 124 144 - -
Trme122558g00001 153 Pfam Protein of unknown function, DUF573 16 109 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122558g00001 Trme-Chr122558 1 459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122558g00001 17 109 GeBP Transcription Factor Family AT4G00390 36.559 6.94e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trme122558g00001 DUF573 4.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122558g00001 - K19673 tpra:123886435 178.718