Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122508g00001 GTAGTTGGGACAAGGGGCTATGCTGCACCAGAGTATCTTGAAACAGGTCATCTAAAATCAAAGAGNGACGTTTGGAGTTTTGGTGTAGTATTGTATGAGATTCTCACAGGAAGACGAACAATTGAAAGAAATCTTCCAATAGCGGAACAAAAGCTTATAGAATGGGTTAAAAACTACCCTGCTGATACTAGCAGATTCAGCTTGATTATAGACCCTCGACTCGCGAAACAATATTCTCTTGATTCAGCTAGGAAAATTGCTAAGTTGGCAGATAGTTGCTTGAAGAAGAATGCTGAAGATAGGCCATCAATGAGTCAAGTAGTGGAAAGTTTGAAA 336 0.3958 VVGTRGYAAPEYLETGHLKSKXDVWSFGVVLYEILTGRRTIERNLPIAEQKLIEWVKNYPADTSRFSLIIDPRLAKQYSLDSARKIAKLADSCLKKNAEDRPSMSQVVESLK 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122508g00001 112 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
Trme122508g00001 112 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme122508g00001 112 Pfam Protein kinase domain 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme122508g00001 112 PANTHER OS01G0588500 PROTEIN-RELATED 1 112 - -
Trme122508g00001 112 SUPERFAMILY Protein kinase-like (PK-like) 1 109 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122508g00001 Trme-Chr122508 284 619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122508g00001 1 112 Receptor kinase-like Gene Family AT4G02010 41.071 1.46e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme122508g00001 Pkinase 9.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122508g00001 - - gmx:100782248 189.119