Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122404g00001 ATGCACGGGGACATGCCTCAAAGAGAAAGAGATGCAATTATGGAAGAATTTCGTGCTGGAACAACTCGATTATTAATAACGACAGATATTTGGGCTCGTGGCCTTGATGTACAGCAG 117 0.4359 MHGDMPQRERDAIMEEFRAGTTRLLITTDIWARGLDVQQ 39
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122404g00001 39 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 39 IPR001650 -
Trme122404g00001 39 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 38 IPR027417 -
Trme122404g00001 39 Pfam Helicase conserved C-terminal domain 1 38 IPR001650 -
Trme122404g00001 39 Gene3D - 1 39 IPR027417 -
Trme122404g00001 39 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122404g00001 Trme-Chr122404 41 157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122404g00001 1 39 Eukaryotic Initiation Factors Gene Family AT3G19760 79.487 7.14e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122404g00001 K13025 - atr:18437609 78.1814