Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122386g00001 ATGATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCNGAGAGGAAATTTTCTGAAAGGGAATATATCGGTTCAAAGAAGTTTGCTCTCAAGGCTCAAAATTTGTATCCTGATTTGGAGGATATTTCGCAGTTTTTGACTACTATTGATATTTATATATCTGCCGAGAACAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAATACAGGAAGCTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACAAAAAGACTAGAATATAACCAGAAGAGGAGTTTGAAAAACTTCCAACATACTACTCCCAACCGTGCTGGGCATCCATCCAATGTACCCACTTCAAATGGTT 466 0.4056 MMECNKDEAVRAKEIAERKFSEREYIGSKKFALKAQNLYPDLEDISQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKNFQHTTPNRAGHPSNVPTSNG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122386g00001 155 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Trme122386g00001 155 Gene3D DnaJ domain 55 147 IPR036869 -
Trme122386g00001 155 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Trme122386g00001 155 MobiDBLite consensus disorder prediction 130 155 - -
Trme122386g00001 155 CDD DnaJ 67 120 IPR001623 -
Trme122386g00001 155 PANTHER BNAC03G44070D PROTEIN 2 136 - -
Trme122386g00001 155 SUPERFAMILY Chaperone J-domain 57 127 IPR036869 -
Trme122386g00001 155 Pfam DnaJ domain 67 128 IPR001623 -
Trme122386g00001 155 SMART dnaj_3 66 123 IPR001623 -
Trme122386g00001 155 MobiDBLite consensus disorder prediction 132 155 - -
Trme122386g00001 155 PRINTS DnaJ domain signature 69 87 IPR001623 -
Trme122386g00001 155 PRINTS DnaJ domain signature 103 123 IPR001623 -
Trme122386g00001 155 PRINTS DnaJ domain signature 87 102 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122386g00001 Trme-Chr122386 1 466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122386g00001 5 133 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.259 7.88e-26 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122386g00001 - - cam:101501612 293.508