Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122359g00001 ATGTTCCTCCCTCGTGCAAAAGACGACGAATGTCTTATTCTGGCCAGTGATGGCTTGTGGGATGTCATGACAAATGAAGAAGCATGTGACTTAGCTCGGAGACGCATACTTCTCTGGCACAAGAAAAACGGCTCGGAGCTGTCTTCACTAAGGGGAGAGGGAATCGATCCTGCCGCACAGGCAGCTGCGGAGTACTTATCAAACCGTGCTTTGCAGAAAGGGAGCAAAGATAACATCACTGTCATTGTGGTAGATTTGAAAGCACAACGAAAGTTTAAGAGTAAATCATGA 291 0.4674 MFLPRAKDDECLILASDGLWDVMTNEEACDLARRRILLWHKKNGSELSSLRGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKS 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122359g00001 96 PANTHER PROTEIN PHOSPHATASE 5 86 IPR015655 GO:0004722|GO:0006470
Trme122359g00001 96 CDD PP2Cc 7 86 IPR001932 -
Trme122359g00001 96 ProSiteProfiles PPM-type phosphatase domain profile. 1 86 IPR001932 -
Trme122359g00001 96 SUPERFAMILY PP2C-like 7 87 IPR036457 -
Trme122359g00001 96 Gene3D - 1 96 IPR036457 -
Trme122359g00001 96 Pfam Protein phosphatase 2C 6 79 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122359g00001 Trme-Chr122359 96 386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122359g00001 2 96 PP2C-type Phosphatase Gene Family AT1G17550 72.632 1.13e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122359g00001 K14497 - zju:107420119 179.489