Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122323g00001 ATGAGGAGGAAGTATCGTATCTCTGGTCTGACTTCACAAGCTACCAGAGAGTTGACATTCCCTGTGGACGAGAGGGGAACTATGAAGTCTGTTGTTGAGTATTTCTATGAGACATATGGTTTTTCCATTCAACATACTCAATGGCCTTGTTTGCAAGTGGGAAA 164 0.4268 MRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFSIQHTQWPCLQVG 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122323g00001 54 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 54 - -
Trme122323g00001 54 Pfam PAZ domain 2 54 IPR003100 GO:0005515
Trme122323g00001 54 SUPERFAMILY PAZ domain 2 54 IPR036085 GO:0005515
Trme122323g00001 54 CDD PAZ_argonaute_like 1 54 - -
Trme122323g00001 54 Gene3D paz domain 1 54 - -
Trme122323g00001 54 ProSiteProfiles PAZ domain profile. 1 54 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122323g00001 Trme-Chr122323 1 250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122323g00001 1 54 Eukaryotic Initiation Factors Gene Family AT1G48410 87.037 8.61e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122323g00001 K11593 - qsa:O6P43_008421 114.775