Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1223010g00001 GGTGCATGTGGTGAGAATTATGGCACTGATGAATTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAACAAGAGAGCTCGCCCTTGA 165 0.4485 GACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRARP 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1223010g00001 54 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 53 IPR013083 -
Trme1223010g00001 54 PANTHER CPG BINDING PROTEIN 1 53 IPR045104 GO:0006355|GO:0042393
Trme1223010g00001 54 Pfam PHD-finger 2 48 IPR019787 -
Trme1223010g00001 54 SMART PHD_3 2 47 IPR001965 -
Trme1223010g00001 54 FunFam PHD finger alfin-like protein 1 48 - -
Trme1223010g00001 54 SUPERFAMILY FYVE/PHD zinc finger 2 50 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1223010g00001 Trme-Chr1223010 1 165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1223010g00001 1 53 Alfin-like Transcription Factor Family AT3G42790 88.679 1.12e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trme1223010g00001 PHD 1.7e-11 CL0390