Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122264g00001 ATGAGTCTAAACTCTAGTGGCAGCGGCGGTAGCGGTGGTGGTAGTGGGAGCGGTGGCAATAGCGGTAGCCCTTGTGGGGCATGCAAGTTTTTGAGGAGGAAATGTGTGCCAGGGTGTATTTTTGCTCCGTACTTTGATTCGGAGCATGGTACAAGCCATTTCGCGGCTGTGCACAAAGTTTTTGGGGCTAGTAATGTATCCAAACTCCTCCTTGGCATTCCAATTAATAGGAGGCTTGATGCTGCAGTCTCTCTTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTATCTATGGATGTGTTGGTCACATCTTTGCTCTCCAGCAACAGGTAACTCATTAA 342 0.4795 MSLNSSGSGGSGGGSGSGGNSGSPCGACKFLRRKCVPGCIFAPYFDSEHGTSHFAAVHKVFGASNVSKLLLGIPINRRLDAAVSLCYEAQARLRDPIYGCVGHIFALQQQVTH 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122264g00001 113 Pfam Lateral organ boundaries (LOB) domain 24 112 IPR004883 -
Trme122264g00001 113 MobiDBLite consensus disorder prediction 1 23 - -
Trme122264g00001 113 PANTHER LOB DOMAIN CONTAINING PROTEIN 21 112 - -
Trme122264g00001 113 MobiDBLite consensus disorder prediction 1 22 - -
Trme122264g00001 113 ProSiteProfiles LOB domain profile. 23 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122264g00001 Trme-Chr122264 13 354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122264g00001 15 113 AS2 family AT4G00210 75.758 1.05e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme122264g00001 LOB 9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122264g00001 K21994 - gmx:100790517 177.563