Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122222g00001 ATCGATGAAGTTACACCTGTTGCGATAAAACGTCTTAAATCGGGTTCTCAGCAAGGTGTAAAGGAGTTCTTGAATGAGATCGAGTTGCTCTCTCAGCTTCGTCATATTCACTTGGTTTCACTCATTGGATATTGCAACGAAGATGCTGAGATGATTCTCATTTATGACTTCATGCAATGTGGCACTCTCCGTGAAAATTTATATGGTTCGGATAACGAACCTCTTAGGTGGAATCAGCGACTCGATATTCTATTGGGTGCAACAAGGGGGTTGCATTACCTTCATTCAGGTGCAAATCACAATATCATACATCGTGACGTGAAGAGTACAAACATATTGTTGGATGAAAAATGGGTGGCTAAGGTTTCTGATTTTGGCTTATCAAAAGTGGGACCCACGGGAATATCGAATAGTCATATCAGCACTATGGTGAAGGATTTCCTGCAGTTACTGCAGGACGCAGTAATCAATCATAGCCATCCGATTTAA 489 0.4131 IDEVTPVAIKRLKSGSQQGVKEFLNEIELLSQLRHIHLVSLIGYCNEDAEMILIYDFMQCGTLRENLYGSDNEPLRWNQRLDILLGATRGLHYLHSGANHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGISNSHISTMVKDFLQLLQDAVINHSHPI 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122222g00001 162 Pfam Protein tyrosine and serine/threonine kinase 5 130 IPR001245 GO:0004672|GO:0006468
Trme122222g00001 162 Gene3D Transferase(Phosphotransferase) domain 1 59 150 - -
Trme122222g00001 162 SUPERFAMILY Protein kinase-like (PK-like) 6 138 IPR011009 -
Trme122222g00001 162 PANTHER OS07G0166700 PROTEIN 5 146 IPR045272 GO:0004714|GO:0006468
Trme122222g00001 162 SMART serkin_6 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme122222g00001 162 ProSiteProfiles Protein kinase domain profile. 1 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme122222g00001 162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
Trme122222g00001 162 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122222g00001 Trme-Chr122222 1 489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122222g00001 5 145 Receptor kinase-like Gene Family AT3G51550 68.794 1.30e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme122222g00001 PK_Tyr_Ser-Thr 7.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122222g00001 - - tpra:123888472 269.626