Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1221889g00001 AAAGCTGCTAACATATTGTTGGATGAAGAGTTTGAGGCTGTTGTTGGGGATTTTGGATTGGCCAAGCTTATGGATTACAAGGACACCCATGTGACAACTGCTGTTAGGGGTACAATCGGGCATATTGCTCCCGAGTACCTATCTACTGGAAAATCTTCAGAGAAAACTGATGTTTTTGGTTATGGTATCATGCTTCTTGAGCTTATCACT 210 0.419 KAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1221889g00001 70 ProSiteProfiles Protein kinase domain profile. 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1221889g00001 70 SUPERFAMILY Protein kinase-like (PK-like) 1 70 IPR011009 -
Trme1221889g00001 70 Gene3D Transferase(Phosphotransferase) domain 1 1 70 - -
Trme1221889g00001 70 Pfam Protein kinase domain 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1221889g00001 70 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1221889g00001 Trme-Chr1221889 1 210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1221889g00001 1 70 Receptor kinase-like Gene Family AT1G71830 100.000 6.80e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme1221889g00001 Pkinase 4.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1221889g00001 K13418 - egt:105951026 140.584