Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12216g00001 GATTCGTTGGTTTATGAGGCCGAGGCTCGTGTGAGGGACCCCGTTAATGGGTATTTGGATTATGTTCACAATCTTGAACATCAATTGATGGAAGTTGAACAAAAAATCAATAATGTGAAAAGTCATCTGACCAAATACCTCAGTCCTGAGGTTATTCAATTTGTGATGAACAATCCTAGTTGTTTCGGCTTTGAGCCTAACAACAATCAAAATTCAACTGCTCAGTTGACTGCTGCTCAACACCAACAGTTAGAACTACTGCGACAAACAATTTATAGGTCTGGCACAAGGTTNAACCCTGTTGATGGTGATGGGTTTGGGCAACATATGGATGCTAATGTTCTTGATCTCGATGGTGCAACTCTTTTTCGTGCTATTATCATTCCCCATGATATGATTAATGGTAATGAGTAA 414 0.3961 DSLVYEAEARVRDPVNGYLDYVHNLEHQLMEVEQKINNVKSHLTKYLSPEVIQFVMNNPSCFGFEPNNNQNSTAQLTAAQHQQLELLRQTIYRSGTRXNPVDGDGFGQHMDANVLDLDGATLFRAIIIPHDMINGNE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12216g00001 137 Pfam Lateral organ boundaries (LOB) domain 2 40 IPR004883 -
Trme12216g00001 137 Coils Coil 22 42 - -
Trme12216g00001 137 ProSiteProfiles LOB domain profile. 1 43 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12216g00001 Trme-Chr12216 824 1237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12216g00001 1 87 AS2 family AT5G66870 32.222 6.40e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme12216g00001 LOB 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12216g00001 - - vvo:131607884 102.834