Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme121973g00001 AATTGCTCGTGTCAGGTAGCGCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCGTATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGCCAG 186 0.4731 NCSCQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDQVIQFVAGQ 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme121973g00001 62 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 62 - -
Trme121973g00001 62 Pfam AMP-binding enzyme C-terminal domain 10 61 IPR025110 -
Trme121973g00001 62 SUPERFAMILY Acetyl-CoA synthetase-like 6 61 - -
Trme121973g00001 62 Gene3D - 3 62 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme121973g00001 Trme-Chr121973 3 265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme121973g00001 5 62 Monolignol Biosynthesis Gene Families AT1G20480 63.793 3.79e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme121973g00001 K10526 - gmx:100783104 110.538