Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme121851g00001 ATGCCGGATGAGAGTGTGAGCATAGAGAACCATAGAGACAGATTGTTGAGATTGGTTAAGAGTTTGTCTCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAATACTTCTCCATTTTTTCATAGGTTTGTGGAGACRATGGATTATTAYACAGCTATGTTTGAATCAATAGACGTGGCTTGTGCCAAAGAYGATAAGAAACGGATTAGTACGGAGCAGAACTGCGTGGCACGGGACATTGTTAACATGATAGCCTGTGAGGGGGTTGAGAGGGTGGAGAGGCATGAAGTTTTTGGAAAGTGGAGGATGAGATTTGCCATGGCTGGATTCAGACAATGCTCATTGAGTTCTTCAGTGATGCATTCTGTCCAAAATTTGTTGAAGGACTACAATCAAAATTATAGACTTGAACATAGAGATGGTGCTATCTATCTTGGTTGGATGAAGAGAGCTATGGCCACCTCTTCTGCTTGGAGATGTAATTGA 492 0.4187 MPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETMDYYTAMFESIDVACAKDDKKRISTEQNCVARDIVNMIACEGVERVERHEVFGKWRMRFAMAGFRQCSLSSSVMHSVQNLLKDYNQNYRLEHRDGAIYLGWMKRAMATSSAWRCN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme121851g00001 163 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 154 IPR005202 -
Trme121851g00001 163 Pfam GRAS domain family 1 161 IPR005202 -
Trme121851g00001 163 ProSiteProfiles GRAS family profile. 1 161 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme121851g00001 Trme-Chr121851 55 546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme121851g00001 1 161 GRAS Transcription Factor Family AT5G48150 67.702 7.01e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme121851g00001 GRAS 2.3e-56 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme121851g00001 - - gmx:100792931 288.885