Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme121599g00001 ATGCAACGTGTAGCTTCATGTTTTACAGAATCTCTAAGTGCAAGACTCGCCGCAACCCTAACAACAAAGTCATCATCAAACAAAAAGTCAACAACACCATCATCATCATCCTCCTCCTCATCATCATGTTTCTCTAGCTTCCCATCAAACCCTATGGAAGTTCTCAAGATCTACCAAATTGTCTACCAAGCTTGTCCTTACATCAAATTTGCACATTTCACAGCTAACCAAGCGATTTTCGAGGCATTTGAGACTGAAGAACGTGTCCATGTTATTGACCTAGATATTCTCCAGGGTTACCAATGGCCTGCGTTTATGCAGGCATTGGCTGCACGGTCCGGCGGTGCTCCATTTCTTCGGATCACCGGTGTAGGGCCGTGCATTGAATCGGTTAGGGAAACTGGACGATGTTTAACTGAGTTAGCTCATTCTCTTCGCATCCCCTTCGAGTTC 453 0.4525 MQRVASCFTESLSARLAATLTTKSSSNKKSTTPSSSSSSSSSCFSSFPSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARSGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIPFEF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme121599g00001 151 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 151 IPR005202 -
Trme121599g00001 151 ProSiteProfiles GRAS family profile. 1 151 IPR005202 -
Trme121599g00001 151 MobiDBLite consensus disorder prediction 24 46 - -
Trme121599g00001 151 Pfam GRAS domain family 1 151 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme121599g00001 Trme-Chr121599 1 453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme121599g00001 2 151 GRAS Transcription Factor Family AT3G54220 40.667 1.16e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme121599g00001 GRAS 6.4e-47 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme121599g00001 - - rcu:8285306 214.927