Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme121469g00001 ATGGTTGGTGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGCGCATTGCCATCGCAAGAGCAATCCTTAAGAATCCAAGAATTTTACTTCTAGATGAAGCTACAAGTGCACTCGATGCAGAATCTGAAAGGGTGGTGCAAGAGGCTCTAGATAGGATCATGGTCAACCGAACAACGGTTGTTGTTGCACATCGCTTGAGCACAGTGAGGAATGCTGACATGATCGCTGTAATCCATAGAGGGAAAATGGTTGAGAAAGGAACTCACTCAGAATTACTCAAGGATCCTGAAGGAGCT 300 0.4633 MVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGA 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme121469g00001 100 Pfam ABC transporter 2 37 IPR003439 GO:0005524
Trme121469g00001 100 Gene3D - 1 96 IPR027417 -
Trme121469g00001 100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 96 IPR027417 -
Trme121469g00001 100 PANTHER ABC TRANSPORTER B FAMILY 1 98 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme121469g00001 Trme-Chr121469 1 439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme121469g00001 1 99 Calmodulin-binding Proteins AT2G36910 69.000 1.75e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme121469g00001 K05658 - ini:109159584 189.504