Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme121212g00001 ATGCAAATCTACGCAAGGGACTTGTGTGGAAAGATGATCCCATTGAGAGTTAAGAGTTCAGACACGATAGTCAATGTGAAGAAGAAGATTGCTGAAACGGAAGGGATCCCAGTGGAGCAACAACGTCTGATATTAGCCTGTAAGCAACTAAATGATAAGCTGACCCTTGCCGATTACAACATCCAAGAGAAATCAATCCTCAACCTCGTCATTCGCTTGACTGGGAGCTAG 231 0.4416 MQIYARDLCGKMIPLRVKSSDTIVNVKKKIAETEGIPVEQQRLILACKQLNDKLTLADYNIQEKSILNLVIRLTGS 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme121212g00001 76 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trme121212g00001 76 SMART ubq_7 1 72 IPR000626 GO:0005515
Trme121212g00001 76 Gene3D - 1 76 - -
Trme121212g00001 76 FunFam Polyubiquitin 5 1 76 - -
Trme121212g00001 76 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trme121212g00001 76 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trme121212g00001 76 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trme121212g00001 76 PANTHER UBIQUITIN 1 75 - -
Trme121212g00001 76 Pfam Ubiquitin family 10 73 IPR000626 GO:0005515
Trme121212g00001 76 SUPERFAMILY Ubiquitin-like 1 75 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme121212g00001 Trme-Chr121212 43 273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme121212g00001 1 76 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 63.158 4.04e-27 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme121212g00001 - K08770 mtr:11432566 100.138