Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme121070g00001 ATGCATTCAAGCAAACGAGTCCTAGAGATGGTTTTTTCTGAAATTTCTAGAAATGTAGTTAAATATTCTGGGGGATTGCCGCTAGCTCTTGAAGTCATTGGATCCTATTTGTTTGATAGGGAGGTATTAGAATGGATTTGTGCATTGGAGAAACTCAAGAGAATTCCCAATGATCAAGTACATAAGAAGTTAAAAATAAGCTACGACGGTTTAAATGATGATACAGAGAAAGACATATTCCTTGACATAGCTTGTTTCTTTATTGGAATGGACCGAACTGATGTTATTCATATATTAAATGGTTGTGGCCTTTTCGCAGAAATTGGAATAAGTGTTCTTGTTGAGCGAAGCCTTGTAACTGTTGATGATAAGAACAAGCTGGGCATGCATGATTTGCTGCGAGATATGGGAAGAGAAATAATTCGTGAGAAATCACCCAAGGAGCCTGAGGAACGTAGTAGGTTGTGGTTTCATGAGGATGTGCTTGATGTATTGTCAGAGCATACTGTAAGAACTTTATATACTTGTTTTAAATTCTTGATTTAA 546 0.3663 MHSSKRVLEMVFSEISRNVVKYSGGLPLALEVIGSYLFDREVLEWICALEKLKRIPNDQVHKKLKISYDGLNDDTEKDIFLDIACFFIGMDRTDVIHILNGCGLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDVLDVLSEHTVRTLYTCFKFLI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme121070g00001 181 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 165 IPR044974 GO:0006952
Trme121070g00001 181 SUPERFAMILY "Winged helix" DNA-binding domain 59 165 IPR036390 -
Trme121070g00001 181 Gene3D - 3 72 IPR042197 -
Trme121070g00001 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 83 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme121070g00001 Trme-Chr121070 60 605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme121070g00001 9 156 WRKY Transcription Factor Family AT5G45050 45.638 9.99e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme121070g00001 - - lja:Lj0g3v0331109.1 283.493