Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120977g00001 ATGTTTTATAAACCTCCAGAACAACAGAGGAAAGAGTCCAGGTTCTGGTCACTTCTATATGTGGGTTTGAGTTTTGTTACTCTAGTGGTTTTGTCACTGCGGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAGCGAATTCTTTCATTGACATTTGAAAAGATTGTGCACCAAGAAATTAAATGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACCGATGCTTCAACCGTGAAAAGTCTTGTTGTTTTGGCTGTGTTACCTATGGTTCTTATGCAAGGAATGGTTCAGATGAAGTTTCTTAAAGGATTTAGTGCCGATGCCAAG 351 0.3932 MFYKPPEQQRKESRFWSLLYVGLSFVTLVVLSLRNYFFGIAGGKLIERILSLTFEKIVHQEIKWFDDPANSSGAVGARLSTDASTVKSLVVLAVLPMVLMQGMVQMKFLKGFSADAK 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120977g00001 117 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 98 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme120977g00001 117 SUPERFAMILY ABC transporter transmembrane region 12 100 IPR036640 GO:0005524|GO:0016020
Trme120977g00001 117 Gene3D ABC transporter type 1, transmembrane domain 1 117 IPR036640 GO:0005524|GO:0016020
Trme120977g00001 117 Pfam ABC transporter transmembrane region 11 98 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme120977g00001 117 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 97 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120977g00001 Trme-Chr120977 39 583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120977g00001 1 90 Calmodulin-binding Proteins AT2G36910 31.868 1.49e-10 55.1