Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120948g00001 ATGGATCATGCTAATGATAATAATATTGTAGCCGACAATATTAATAAATCTAAAGAAATTGAAAGGCGTTATGATGATTATAGAAAGAAAAGAAAGCGTCCATCTAAAGTGGCGGTGGTTCCGACAATGGAATCAACCACCGGAGACACCGCCACGGCGTCACATGGTTTTATATCGGTTATTGGAAGGCGGAGAGTGATGGAAGATGCTATTAAGGAAGTGAAGGAGGGAAGGAGGAATGATGGTTTTGATTGGTGTAAGGCTATGTGTGAGTGTTTTATGAAGATGGATAGGGAAATTGGTGTTGGTGGTGGTTTTGATGGTCATGTTGATGGGAATACGGTGGGTTCTACGGCGGCTGTTGTGGTGGTTGGGAAGGAGGAGATTGTGGTGGCAAATTGTGGTGACTCTAGGGCGGTGTTGTGTAGTGGCG 433 0.4434 MDHANDNNIVADNINKSKEIERRYDDYRKKRKRPSKVAVVPTMESTTGDTATASHGFISVIGRRRVMEDAIKEVKEGRRNDGFDWCKAMCECFMKMDREIGVGGGFDGHVDGNTVGSTAAVVVVGKEEIVVANCGDSRAVLCSG 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120948g00001 144 ProSiteProfiles PPM-type phosphatase domain profile. 54 144 IPR001932 -
Trme120948g00001 144 Pfam Protein phosphatase 2C 84 143 IPR001932 -
Trme120948g00001 144 Gene3D - 3 144 IPR036457 -
Trme120948g00001 144 SUPERFAMILY PP2C-like 50 143 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120948g00001 Trme-Chr120948 11 561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120948g00001 26 142 PP2C-type Phosphatase Gene Family AT5G59220 31.016 7.34e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120948g00001 K14497 - gmx:100813248 126.716