Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120942g00001 ATGCTGATTGAGGTATTTCTGTACAAGAGATGCAGAAACATAGCTTGCCGAAACCTGCTTCCAGCTGATGATTGTTCTTGTGACACATGCACTAACAACAATGGCTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACTTGCCGTTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGGGAGCAGCTTATCTGCATGGGTCCTTCTGTAAAGAGTGGATCAGGGCCAAGCGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGCTGGGTTAAAGACGTCTTCCAGCACTGTGCACCATCATGGGATGGGGAGGCCTTGATGAGGGAGCTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCAACGGGGAATGAAACTCTTTTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGCAGAAAAATGGAATCTAAAGCAGCATGCAGAGCAATATTGTTGGTTTTCCAAG 535 0.4355 MLIEVFLYKRCRNIACRNLLPADDCSCDTCTNNNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGSGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDQRGMKLFWKCDDLKEKLKSRKMESKAACRAILLVFQ 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120942g00001 178 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 2 23 IPR004082 -
Trme120942g00001 178 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 121 140 IPR004082 -
Trme120942g00001 178 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 48 68 IPR004082 -
Trme120942g00001 178 SMART PHD_3 41 101 IPR001965 -
Trme120942g00001 178 Pfam PHD - plant homeodomain finger protein 11 134 IPR032881 -
Trme120942g00001 178 CDD PHD_OBE1_like 41 100 IPR047578 -
Trme120942g00001 178 ProSitePatterns Zinc finger PHD-type signature. 25 100 IPR019786 -
Trme120942g00001 178 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 2 177 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120942g00001 Trme-Chr120942 62 596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120942g00001 11 113 PHD Gene Family AT5G57380 32.692 1.38e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120942g00001 - - gmx:100803870 362.073