Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12089g00001 ATGCTGGTGAACATGGTTGCTTGTAAGGAACTAAGAAACAGCCGGCTGTTCCACAAGCTTCTCGAAGCTGTTCTCAAAACTGGAAACCGTATGAACGATGGAACATACCGTGGTGGTGCACAAGCATTTAAACTTGATACACTCTTGAAATTATCCGATGTAAAAGGAACAGATGGCAAGACTACACTCTTACACTTTGTAGTTCAAGAGATTATCCGCTCTGAGGGCATAAAAGCTGCCCGAGCGGAAAAAGAGAGCCAGGGTTTGTCCAATATTAAAACGGACGAGCTTGTTGAAGATAACACACGTGAAATAGAAGACCACTACCGCGAACTTGGTCTTGAGATGGTATCGCACTTGAGCAGTGAGCTCGAGAATGTTAAGAGAGGTTCCGTTCTAGATGCGGACAGCTTAACAGCTACGGCTACCAAACTTGGCCACGGTCTCGTGAAAGCCAAAGACCTACTGAACAAAAACCTGAAGAATGTGGATGATAGAGGGTTTCGTGAGACATTGGAAAGTTTTGTCCAAAATGCTGAGGCTGATGTTAAGAAACTGCTGGAAGATGAGAAGAAAATCATGGCTCTGGTGAAGAGCACGGGCGATTACTTTCACGGGAATGCAGCAAAGGACGATGGCTTGCGATTGTTTGTAATAGTAAGAGATTTCTTAATAATGGTGGATAAGGTATGCAAGGAGGTGAGAGNNNNNNNNNAGAAGTCATCAAAACCTGTAAAACAAGAAACTTCACGAGGATCGTCTTCATCTGATACACATCCACCACCTTCTGATTTTCGTCAGCGGCTTTTTCCGGCTATCACTGAAAGGAGGATAGATGACATTAGCTCAGATGATGAGAGTCCATAG 867 0.4371 MLVNMVACKELRNSRLFHKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAEKESQGLSNIKTDELVEDNTREIEDHYRELGLEMVSHLSSELENVKRGSVLDADSLTATATKLGHGLVKAKDLLNKNLKNVDDRGFRETLESFVQNAEADVKKLLEDEKKIMALVKSTGDYFHGNAAKDDGLRLFVIVRDFLIMVDKVCKEVRXXXXKSSKPVKQETSRGSSSSDTHPPPSDFRQRLFPAITERRIDDISSDDESP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12089g00001 288 Coils Coil 169 196 - -
Trme12089g00001 288 PANTHER FORMIN-RELATED 6 283 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trme12089g00001 288 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 253 IPR015425 -
Trme12089g00001 288 Gene3D Formin, FH2 domain 3 281 IPR042201 -
Trme12089g00001 288 SUPERFAMILY Formin homology 2 domain (FH2 domain) 5 251 - -
Trme12089g00001 288 MobiDBLite consensus disorder prediction 241 288 - -
Trme12089g00001 288 MobiDBLite consensus disorder prediction 270 288 - -
Trme12089g00001 288 MobiDBLite consensus disorder prediction 243 262 - -
Trme12089g00001 288 Pfam Formin Homology 2 Domain 6 227 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12089g00001 Trme-Chr12089 384 1440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12089g00001 6 279 FH2 protein (formin) Gene Family AT5G54650 65.827 2.01e-116 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12089g00001 - - lang:109351884 395.201