Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120813g00001 ATGCTGAACCTATGCGAATCAGCTGGGGAGAAGCTTTTGGTGTTCAGTCAATACCTCTTGCCTCTGAAATATTTAGAAAAGTTAGTAATGAAATGGAAGGGATGGGGTCTTGACAAAGAAATTTTTGTAATTTCCGGAGATTCAACCACTGAACAAAGGGAGTGCTCCATGGAGAAATTTAACAATTCACCTGATGCCAAAATATTTTTTGGATCCATCAAAGCATGTGGCGAGGGTATATCATTGGTTGGGGCATCCCGGATCATCATCTTAGACGTCCATTTGAACCCGTCTGTTACTCGTCAAGCTATTGGCCNGTGCTTTCCGGCCAGGCCAGAAAAGGAAAGTGTATGTTTATCGATTGATAGCTGCTGA 375 0.4267 MLNLCESAGEKLLVFSQYLLPLKYLEKLVMKWKGWGLDKEIFVISGDSTTEQRECSMEKFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGXCFPARPEKESVCLSIDSC 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120813g00001 124 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 108 IPR044567 GO:0080188
Trme120813g00001 124 CDD SF2_C_SNF 1 105 - -
Trme120813g00001 124 SMART helicmild6 23 113 IPR001650 -
Trme120813g00001 124 Pfam Helicase conserved C-terminal domain 6 105 IPR001650 -
Trme120813g00001 124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 108 IPR027417 -
Trme120813g00001 124 Gene3D - 1 108 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120813g00001 Trme-Chr120813 173 547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120813g00001 8 104 RAD5 or RAD16-like Gene Family AT1G11100 35.052 2.72e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120813g00001 K10875 - gmx:100780454 195.667