Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1207g00001 GATAAATGGCGAAATATTGCTATCAATGATCCTTGTCAAAATAAACAAGCTGTTAATACCCCTCCAAGGTACAATGCCATGGTTTTTGAAGCTCTATCTACATTAAAGGATACTAATGGGTCCGATCTAAACGCCATTGCTAGTTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAGAACACTGAGTTCAAGGTTGAGGACCCTTGTAAATCAAGAGAAGCTTGAAAAGATAGGGCCTGTGCAACCCAGAGATATTGGCAATTGGCTATGTTATTGTAAGGATCTTGGGTGGGGGATATTTCTGTACGTAGAGGTCCTTTGCTCTCGTCTACCATCATCTCTTTCCAATGTTTCTATAAGCAAGACTACCGCCACTGCTATAACTTCCATTGTCAAGACTATATCCCTCCTAAAATTTATGTTCCTTCCTGTGCTTTCATTGGGGCGACCTTCCCACAGAGACTCTGCACTCTCTAACTGA 489 0.4151 DKWRNIAINDPCQNKQAVNTPPRYNAMVFEALSTLKDTNGSDLNAIASFIEQKHQVPQNFRRTLSSRLRTLVNQEKLEKIGPVQPRDIGNWLCYCKDLGWGIFLYVEVLCSRLPSSLSNVSISKTTATAITSIVKTISLLKFMFLPVLSLGRPSHRDSALSN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1207g00001 162 Pfam linker histone H1 and H5 family 22 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme1207g00001 162 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme1207g00001 162 SMART h15plus2 17 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme1207g00001 162 Gene3D - 16 87 IPR036388 -
Trme1207g00001 162 SUPERFAMILY "Winged helix" DNA-binding domain 22 82 IPR036390 -
Trme1207g00001 162 CDD H15 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme1207g00001 162 PANTHER SINGLE MYB HISTONE 4 19 80 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1207g00001 Trme-Chr1207 104 2980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1207g00001 22 80 Single Myb Histone (SMH) Gene Family AT1G72740 62.712 1.16e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1207g00001 K09422 - cave:132188703 95.9005