Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120797g00001 ATGTGTGGAACATTGGATTATCTAGCTCCTGAAATGGTAGAAAACAAATCTCATGATCATGCAGTTGATAATTGGACTCTGGGTATCCTTTGTTATGAGTTCCTCTATGGTGCTCCTCCATTTGAGGCTGAGAGTCAAGAGGATACCTTCAAAAGAATAAGAAATGTTGATCTGAACTTCCCTCATGCCCCTCTTATTTCTAAAAATGCCAAAAATCTGATAACTAGGCTCTTGGTAAAAGATTCTTCAAAAAGGCTCTCACTTCAGAAGATAATGGAGCATCCTTGGATAAAAGAGAATGCAAATCATATGGGTGTTTGCCA 323 0.3839 MCGTLDYLAPEMVENKSHDHAVDNWTLGILCYEFLYGAPPFEAESQEDTFKRIRNVDLNFPHAPLISKNAKNLITRLLVKDSSKRLSLQKIMEHPWIKENANHMGVC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120797g00001 107 SMART serkin_6 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme120797g00001 107 Pfam Protein kinase domain 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme120797g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 1 105 - -
Trme120797g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 1 101 IPR011009 -
Trme120797g00001 107 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme120797g00001 107 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 101 IPR030616 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120797g00001 Trme-Chr120797 97 624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120797g00001 3 98 AGC Kinase Gene Family AT2G36350 46.000 4.14e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Trme120797g00001 Pkinase 3.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120797g00001 K08850 - cave:132187582 190.274