Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120766g00001 ATGCTAACAATATCAAACAAAGATTTCTCAACATCATGTCTAACAGGAAACCCAATTGATGATTGTTGGAAATGTGACACAGATTGGGCCAACAATCGTCAAAGGTTAGCTGATTGTGCAATTGGGTTTGGACAAGATGCAAAAGGAGGAAAAGGTGGTAAATTTTACATTGTAACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTGATACAAAATGAGCCATTGTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTTTAAAACTATTGATGGGCGTGGTGCTGATGTGCATATTGTGGGTGGTGGTTGCATTACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCACCATTGTCATCCCTCGG 433 0.3695 MLTISNKDFSTSCLTGNPIDDCWKCDTDWANNRQRLADCAIGFGQDAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120766g00001 144 Gene3D - 16 144 IPR012334 -
Trme120766g00001 144 SUPERFAMILY Pectin lyase-like 9 141 IPR011050 -
Trme120766g00001 144 PANTHER PECTATE LYASE 18-RELATED 11 144 IPR045032 GO:0030570
Trme120766g00001 144 PRINTS Pollen allergen Amb family signature 99 115 IPR018082 -
Trme120766g00001 144 PRINTS Pollen allergen Amb family signature 39 56 IPR018082 -
Trme120766g00001 144 PRINTS Pollen allergen Amb family signature 63 88 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120766g00001 Trme-Chr120766 42 474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120766g00001 2 144 Polysaccharide Lyase AT3G53190 78.322 1.79e-71 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120766g00001 K01728 - lja:Lj5g3v0670070.1 251.136