Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120755g00001 TGTCACAATGGACATACCCTATGTTCAACTTGTAAGACAAGGGTGCACAACAGGTGCCCAACTTGCAGACAGGAACTCGGCGATATTCGATGTTTAGCATTGGAGAAGATAGCAGAATCACTTGAACTTCCTTGCAGATACACCTCTATTGGGTGTCCAGAGATATTTCCGTATTACAGCAAACTCAAACACGAGTCTATTTGTAACTTCAGACCTTACAACTGCCCTTATGCCGGGTCAGACTGTTCTGTTCTCGGTGATATTTCACAGCTTGTTGCTCATTTAAGGGACGACCACAGAGTTGATATGCATTCTGGATGCACTTTTAATCACCGTTATGTCAAGTCAAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAACG 387 0.4289 CHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYTSIGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVLGDISQLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLT 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120755g00001 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 95 IPR013083 -
Trme120755g00001 129 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 128 - -
Trme120755g00001 129 SUPERFAMILY TRAF domain-like 40 128 - -
Trme120755g00001 129 FunFam E3 ubiquitin-protein ligase SINAT3 37 95 - -
Trme120755g00001 129 Pfam Seven in absentia protein family 29 129 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trme120755g00001 129 ProSiteProfiles Zinc finger SIAH-type profile. 40 100 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120755g00001 Trme-Chr120755 189 575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120755g00001 1 129 C3H Transcription Factor Family AT2G41980 78.295 5.46e-74 221