Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120716g00001 ATGGGAACGGAAAGTTACACTTACATGGGACGGAGTTTCAACGAATTCACCATCAACGATGATTCTACTTCTTCAGCTTTCAGCGACTGTAACAGTGACAGATCCGGCGAATTCGCCACCACTTCTTCTCAATCCCGACGACTCCTTATTTCCTGTGCTTCCGAAAATTCAGATGATCTCATCCGTCAACTTGTTTCCGATCTTCACTCCGATTCAATCGAAGAACAAAAACAAGCCGCCATGGAAATCCGGTTACTCGCGAAAAATAAACCGGAAAATCGAATCAGAATCGCTAAAGCTGGCGCAATNAAACCTTTAATTTCACTTGTTTCTTCACAAGACCTTCAACTTCAAGAATATGGCGTAACCGCGATTTTGAATCTTTCTTTATGTGACGAGAATAAAGAGTTAATAGCTTCTTCAGGAGCGATTAAGCCTCTAGTTAGAGCGTTAAACTCAGGAACTTCAACTGCGAAAGAGAACGCAGCGTGTGCGTTGCTTCGTTTATCTCAGGTGGAAGAGAACAAATCAGCTATTGGAAGATCCGGTGCCATTCCGTTATTAGTGAACCTTCTAGGAAGCGG 584 0.4315 MGTESYTYMGRSFNEFTINDDSTSSAFSDCNSDRSGEFATTSSQSRRLLISCASENSDDLIRQLVSDLHSDSIEEQKQAAMEIRLLAKNKPENRIRIAKAGAXKPLISLVSSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKSAIGRSGAIPLLVNLLGSG 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120716g00001 195 SUPERFAMILY ARM repeat 56 194 IPR016024 -
Trme120716g00001 195 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Trme120716g00001 195 PANTHER U BOX DOMAIN-CONTAINING 60 195 - -
Trme120716g00001 195 FunFam ARM repeat superfamily protein 53 195 - -
Trme120716g00001 195 Gene3D - 31 195 IPR011989 -
Trme120716g00001 195 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Trme120716g00001 195 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Trme120716g00001 195 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Trme120716g00001 195 SMART arm_5 90 130 IPR000225 GO:0005515
Trme120716g00001 195 SMART arm_5 131 171 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120716g00001 Trme-Chr120716 41 624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120716g00001 25 195 U-box Gene Family AT2G23140 45.304 2.52e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120716g00001 - - gmx:100797550 332.798