Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1206609g00001 ATGATAAAAACCTTGGTATTTCACAATGGAAAAGCTCCGCGTGGTGATCGAACTGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGATCCGGCCGACAGAGGAATGGTTCAGGATTCTTATGTAATCTGTAAAGTGTTTCAAAAGGAAGGTCCTGGTCCTAGGAATGGT 174 0.4253 MIKTLVFHNGKAPRGDRTDWVMHEYRLEDKDPADRGMVQDSYVICKVFQKEGPGPRNG 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1206609g00001 58 Gene3D NAC domain 1 53 IPR036093 GO:0003677|GO:0006355
Trme1206609g00001 58 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 51 - -
Trme1206609g00001 58 SUPERFAMILY NAC domain 2 50 IPR036093 GO:0003677|GO:0006355
Trme1206609g00001 58 ProSiteProfiles NAC domain profile. 1 50 IPR003441 GO:0003677|GO:0006355
Trme1206609g00001 58 Pfam No apical meristem (NAM) protein 2 27 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1206609g00001 Trme-Chr1206609 1 174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1206609g00001 2 58 NAC Transcription Factor Family AT5G09330 66.667 2.35e-23 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme1206609g00001 NAM 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1206609g00001 - - mtr:11427573 117.472