Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120563g00001 ATGGATCACGGGGACCATATGGCGTTACCCGGTTCTGCATCTTACTATATGCAGCAGAGAGGACTAGCTGGTTCTGGAGCACAACCTGAGTTACATGTTTCGCCGAGTTTTAATCAACTGTCTAATCCCAATCTACCATTTCAATCCAGCATTGGTGGTGGTAGTAACATTGGATCAACATTACCTTTAGAATCTTTACCAATTTCATCTCAAGGTGTCAATGTGAGTGGTCCTACCGGGGTACCATCTGGGGAAACTGTGAAAAGGAAGAGAGGAAGGCCGAGGAAATATGGCTCTGATAGAGTTGTGTCGTTGGCACTGAGTCCAAGTCCAGCACCATCTAGTAATCCCGGAATCGTGATGCAAGGAGGCCCGAAACGAGGGAGAGGGCGTCCACCTGGGAGTGGGAAGAAACAACAATTGGCTTCTTTTGGTAATTCTCTATTGCAATTTATTGTTTGTTAG 465 0.4624 MDHGDHMALPGSASYYMQQRGLAGSGAQPELHVSPSFNQLSNPNLPFQSSIGGGSNIGSTLPLESLPISSQGVNVSGPTGVPSGETVKRKRGRPRKYGSDRVVSLALSPSPAPSSNPGIVMQGGPKRGRGRPPGSGKKQQLASFGNSLLQFIVC 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120563g00001 154 MobiDBLite consensus disorder prediction 20 39 - -
Trme120563g00001 154 MobiDBLite consensus disorder prediction 44 81 - -
Trme120563g00001 154 PRINTS AT-hook-like domain signature 124 135 IPR017956 GO:0003677
Trme120563g00001 154 PRINTS AT-hook-like domain signature 88 98 IPR017956 GO:0003677
Trme120563g00001 154 MobiDBLite consensus disorder prediction 44 146 - -
Trme120563g00001 154 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Trme120563g00001 154 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Trme120563g00001 154 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 58 147 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120563g00001 Trme-Chr120563 120 584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120563g00001 1 148 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 44.242 2.40e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120563g00001 - - cam:101500720 194.126