Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120537g00001 GCCACCAACATAATCATTCATAACATTCGAATTCATCACTGCAAAGCTCAAACACCAGGGATGGTGATGGGGTCTAATGGAAAGGTAATTCATCTAGGTTCAGTAGATGGAGATGCAATTAGATTGGTCACGDCTTCAAAAATTTGGATTGATCATAATACACTGTATAAATGTGAAGATGGTCTTCTTGATGTTACAAGAGGTTCTACTGATATCACTATATCCAATAACTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGCCATGATGATGGGTATGTGAGAGACAAAAATATGAAAGTCACGGTTGTGTACAATCATTTCGGACCTAACTGCAACCAACGGATGCCTAGGTAA 360 0.3833 ATNIIIHNIRIHHCKAQTPGMVMGSNGKVIHLGSVDGDAIRLVTXSKIWIDHNTLYKCEDGLLDVTRGSTDITISNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPR 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120537g00001 119 PANTHER PECTATE LYASE 18-RELATED 2 119 IPR045032 GO:0030570
Trme120537g00001 119 Pfam Pectate lyase 2 119 IPR002022 -
Trme120537g00001 119 Gene3D - 1 119 IPR012334 -
Trme120537g00001 119 SUPERFAMILY Pectin lyase-like 1 119 IPR011050 -
Trme120537g00001 119 SMART amb_all 1 119 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120537g00001 Trme-Chr120537 238 597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120537g00001 1 119 Polysaccharide Lyase AT5G09280 75.630 2.16e-67 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120537g00001 K01728 - gmx:100780437 220.705