Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12052g00001 ATGATGACTGCCGAAACAGGAACATATCGATGGATGGCTCCGGAACTTTACAGCACCGTTACCCGAAGACAAGGTGAGAAGAAGCATTACAACCATAAAGTGGATGCCTACAGCTTTGCAATTATGTTGTGGGAGCTCATCCATAACAAGTTGCCCTTTGAAGGCAAGTCTAATTTACAGGCAGCATATGCTGCTGCTTTTAAGGTAGATGTCTAA 216 0.4398 MMTAETGTYRWMAPELYSTVTRRQGEKKHYNHKVDAYSFAIMLWELIHNKLPFEGKSNLQAAYAAAFKVDV 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12052g00001 71 Gene3D Transferase(Phosphotransferase) domain 1 1 70 - -
Trme12052g00001 71 Pfam Protein kinase domain 2 61 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12052g00001 71 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 2 65 - -
Trme12052g00001 71 SUPERFAMILY Protein kinase-like (PK-like) 2 63 IPR011009 -
Trme12052g00001 71 ProSiteProfiles Protein kinase domain profile. 1 71 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12052g00001 Trme-Chr12052 1162 1472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12052g00001 1 70 MAP Kinase Kinase Kinase AT5G40540 92.857 1.15e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme12052g00001 Pkinase 3.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12052g00001 - - csin:114263364 139.043