Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120524g00001 ATGGCATCAATATCAGCAACTGGTTCATGGAGTGCTGAGGACAACAAAGCATTTGAAAGGGCAATAGTTGATTTTGATAAGGACACACCTGATCGTTGGTCCAATGTTGCTCAAGTTGTTGGTGGAGGGAAGACTCCTGAAGATGTTGAGAGACACTATGAACTTCTTCTTAGGGATATTAACCTCGTTGAATCAGATCAAGTTCCACTCCCAAATTACAATGACGTTGAAAGCTTTGATGAGGAG 246 0.4187 MASISATGSWSAEDNKAFERAIVDFDKDTPDRWSNVAQVVGGGKTPEDVERHYELLLRDINLVESDQVPLPNYNDVESFDEE 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120524g00001 82 CDD SANT 9 57 IPR001005 -
Trme120524g00001 82 Gene3D - 2 70 - -
Trme120524g00001 82 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Trme120524g00001 82 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Trme120524g00001 82 ProSiteProfiles SANT domain profile. 5 61 IPR017884 -
Trme120524g00001 82 SMART sant 6 59 IPR001005 -
Trme120524g00001 82 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 4 75 IPR044636 GO:0003700
Trme120524g00001 82 FunFam Transcription factor SRM1 2 70 - -
Trme120524g00001 82 Pfam Myb-like DNA-binding domain 7 54 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120524g00001 Trme-Chr120524 152 397 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme120524g00001 Myb_DNA-binding 4.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120524g00001 - - gmx:100804396 115.161