Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120420g00001 ATGGCACGTGCAGTTGCTTCTGAAGCAGGACTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAGATCATTGTTTGTTAAAGCAAGGGACAATGCCCCATCAGTAATATTTTTCGATGAAATAGATAGTCTTGCTATGAATCGTGGGAGAGATGGTGATGGTGTTTCAGTGTCCGATAGGGTCATGGCTCAACTCCTTGTTCAAATGGATGGTGTGCGTAGCAGAGGTGATGTTGCTGTTATAGCTGCAACAAATAGGCCAGACAATATTGACCCTGCTCTTTTAAGACCAG 328 0.4512 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFVKARDNAPSVIFFDEIDSLAMNRGRDGDGVSVSDRVMAQLLVQMDGVRSRGDVAVIAATNRPDNIDPALLRP 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120420g00001 109 ProSitePatterns AAA-protein family signature. 90 108 IPR003960 GO:0005524|GO:0016887
Trme120420g00001 109 PANTHER AAA-FAMILY ATPASE 1 109 - -
Trme120420g00001 109 Gene3D - 1 108 IPR027417 -
Trme120420g00001 109 Pfam ATPase family associated with various cellular activities (AAA) 1 108 IPR003959 GO:0005524|GO:0016887
Trme120420g00001 109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 108 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120420g00001 Trme-Chr120420 137 577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120420g00001 1 109 Calmodulin-binding Proteins AT3G56690 81.651 3.01e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120420g00001 - - tpra:123888657 212.616