Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120343g00001 ATGGAAAATGGTAGTCTTGGTGAAGTTTTGCATGGAAAAAGAGGTGAGTTTTTGAAATGGGATGTTAGGTTGAAAATTGCTGTTGAAGCTGCTAAAGGATTATGTTATTTGCATCATGATTGTTCACCTTTGATTATTCATAGAGATGTTAAGTCAAATAATATTTTGTTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTTATGCAAGATAATGGAAATTCTGAATGCATGTCTTCTATTGCTGGTTCTTATGGATATATTGCTCCAGTGTACTTTGCAATTAGTTTGAAAGATGCTTGGCAAGGTTTTGAAACTAGGTCGTTACGTTGTGATCCTTGA 357 0.3473 MENGSLGEVLHGKRGEFLKWDVRLKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFMQDNGNSECMSSIAGSYGYIAPVYFAISLKDAWQGFETRSLRCDP 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120343g00001 118 FunFam Protein kinase superfamily protein 1 73 - -
Trme120343g00001 118 Pfam Protein kinase domain 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme120343g00001 118 Gene3D Transferase(Phosphotransferase) domain 1 1 110 - -
Trme120343g00001 118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Trme120343g00001 118 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 99 - -
Trme120343g00001 118 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme120343g00001 118 SUPERFAMILY Protein kinase-like (PK-like) 1 101 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120343g00001 Trme-Chr120343 43 615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120343g00001 1 103 Receptor kinase-like Gene Family AT5G65700 81.553 3.94e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme120343g00001 Pkinase 3.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120343g00001 - - gmx:100803075 193.741