Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120311g00001 GAAGAAAAGAAATTGAATTGGGATGACAGGCTGCAAATTGCTGTTGACATTTCACATGGAATCGAGTATCTTCATGAAGGAGCAGTTCCACCAGTCATACATCGTGATTTGAAGTCTCCCAACATATTGCTAGACGACTCTATGAGAGCTAAGGTAATGTCGTTTGTACAAGTTCTTTTTGATAATCAGATTGCAGATTCATTTTCCTAA 210 0.381 EEKKLNWDDRLQIAVDISHGIEYLHEGAVPPVIHRDLKSPNILLDDSMRAKVMSFVQVLFDNQIADSFS 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120311g00001 69 PANTHER OS01G0750732 PROTEIN 2 55 - -
Trme120311g00001 69 Pfam Protein tyrosine and serine/threonine kinase 2 55 IPR001245 GO:0004672|GO:0006468
Trme120311g00001 69 ProSitePatterns Serine/Threonine protein kinases active-site signature. 32 44 IPR008271 GO:0004672|GO:0006468
Trme120311g00001 69 ProSiteProfiles Protein kinase domain profile. 1 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme120311g00001 69 SUPERFAMILY Protein kinase-like (PK-like) 3 55 IPR011009 -
Trme120311g00001 69 Gene3D Transferase(Phosphotransferase) domain 1 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120311g00001 Trme-Chr120311 319 603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120311g00001 5 55 Receptor kinase-like Gene Family AT1G49100 54.902 4.73e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Trme120311g00001 PK_Tyr_Ser-Thr 6.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120311g00001 - - gmx:100794239 100.138