Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12026g00001 ATGCCTCATGCAAAAATTCAAAATGTATTGAGATTGAGTTATGATAGACTCGATCGAGAAGAGAAGAACATATTTTTATATATTGCATGTCTGTTGAAAGGATATGAAGTTCAACAAATAATAGCTTTGCTTGATGCTTGTGGTTTCTCAACAATTATTGGGTTAAAAGTCCTTAAAGACAAAGCCCTTATAATTGAAGCCAAGGGCGCTGGAAAATCAATGGTTCTGATGCATGACTTGATACAAGAAATGGGCTGGGAGATTGTTCGAGAAGAATGTATTGAAGACCCTGGAAAACGCAGTAGGTTATGGGATCCTAATGATGTTCATCAAGTATTGACAAATAACACGGGAACTAAAGCCGTTAAAAGCATAACTCTGAATGTCTCGAAATTTGATGAGCTGCAGTTAAGTCCTCAAGTCTTCGGTAGGATGCAGCAGTTAAAATTTCTTAAATTTACCCAACATTATGGCGATGAGAAAATCCTGTATCTTCCTCAGGGTCTTGAATCTTTGCCAAATGACCTACTGCTTTTTCAATGGGTTAGTTATCCTTTGAAATCCCTGCCTCAGTCTTTTTGTGCAGAAAATCTTGTYGAGCTAAAATTGACTTCGAGCCGAGTGGAAAAACTTTGGGATGGAGTTCAGAATATTCAACATTTAAAGAAAATTGACCTCAGTTATTCCAAATATCTGCTAGAGCTCCCTGATTTTTCAAAGGCCTCAAATCTTGAAGAAATAGAACTCTATGGCTGCAAAAGTTTGCTTAATGTTCATCCTTCGATTTTACGTCTCAACAAGCTAGTGCGACTGAACCTATTTTACTGCAAAGCACTTACCAGTCTTCGAAGTGATACTCATTTAAGATCCCTTCGCGATCTCTTCCTCGGTGGTTGCTCAAAACTCAAGGAGTTTTCAGTGACATCTGAGAATATGAAAGACTTAACTTTAACTTCAACAGCTATCAATGAATTGCCCTCATCAATTGGTAGTCTCAAAAAACTCGAATCATTGAGTCTTGATTTCTGCAAAAGCCTAATCAACCTTCCAAATGAAATTACCGACCTGAGATCACTTCGAGCTCTTTACATTCATGGTTGCACACAACTTGATGCATCAAATCTTCATATCCTACTTRGTGGTTTAGCTTCTTTAGAAACGTTAAAGCTGGAAGAATGTCGTAACTTATTCGAAATTCCAGACAACATCAGCTTCCTATCATCATTGCGTGAGTTGTTACTAAAAGAAACTGATATTGAGATATTTCCTGCAAGCATCAAGCATCTTTCTAAGCTGGAAAAGCT 1304 0.375 MPHAKIQNVLRLSYDRLDREEKNIFLYIACLLKGYEVQQIIALLDACGFSTIIGLKVLKDKALIIEAKGAGKSMVLMHDLIQEMGWEIVREECIEDPGKRSRLWDPNDVHQVLTNNTGTKAVKSITLNVSKFDELQLSPQVFGRMQQLKFLKFTQHYGDEKILYLPQGLESLPNDLLLFQWVSYPLKSLPQSFCAENLVELKLTSSRVEKLWDGVQNIQHLKKIDLSYSKYLLELPDFSKASNLEEIELYGCKSLLNVHPSILRLNKLVRLNLFYCKALTSLRSDTHLRSLRDLFLGGCSKLKEFSVTSENMKDLTLTSTAINELPSSIGSLKKLESLSLDFCKSLINLPNEITDLRSLRALYIHGCTQLDASNLHILLXGLASLETLKLEECRNLFEIPDNISFLSSLRELLLKETDIEIFPASIKHLSKLEKL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12026g00001 435 Pfam Leucine Rich Repeat 197 216 IPR011713 -
Trme12026g00001 435 SUPERFAMILY "Winged helix" DNA-binding domain 5 113 IPR036390 -
Trme12026g00001 435 Gene3D Ribonuclease Inhibitor 105 310 IPR032675 -
Trme12026g00001 435 Gene3D Ribonuclease Inhibitor 311 435 IPR032675 -
Trme12026g00001 435 SUPERFAMILY L domain-like 77 435 - -
Trme12026g00001 435 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 380 IPR044974 GO:0006952
Trme12026g00001 435 FunFam Disease resistance protein RPS4 119 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12026g00001 Trme-Chr12026 1 1524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12026g00001 6 435 WRKY Transcription Factor Family AT4G12020 40.590 3.55e-75 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12026g00001 - - gmx:100799103 737.643