Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1201g00001 CAGCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAGCCTTTAACCACGGGAAGTGTGTCACTCCAGGCTGGGGAGTCTGAATTTGTTGACAGTCCCTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCTGATAGCCTTAAAAGTTTCTTTGAGAAAGGAAAAGCTCTTAGTGCCAAGGTTTCACGGATTCCTGGGAGCACAAAATCCAGCGGTTTCGGTTTTGTCACATTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACGATGCTGTCTTGAATCAGCTGGTACAGTGTCCCTCTGTTAAGTTCCTCTAA 342 0.4327 QQIGGREIKVNITEKPLTTGSVSLQAGESEFVDSPYKVYVGNLAKNVTSDSLKSFFEKGKALSAKVSRIPGSTKSSGFGFVTFSSDEDVEAAISSFNDAVLNQLVQCPSVKFL 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1201g00001 113 Gene3D - 7 105 IPR012677 -
Trme1201g00001 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
Trme1201g00001 113 SUPERFAMILY RNA-binding domain, RBD 32 102 IPR035979 GO:0003676
Trme1201g00001 113 PANTHER OS02G0815200 PROTEIN 1 101 - -
Trme1201g00001 113 SMART rrm1_1 37 108 IPR000504 GO:0003723
Trme1201g00001 113 FunFam 30S ribosomal protein 2, chloroplastic 23 107 - -
Trme1201g00001 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1201g00001 Trme-Chr1201 3 1096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1201g00001 38 97 Eukaryotic Initiation Factors Gene Family AT4G34110 49.180 2.15e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1201g00001 K13126 - sind:105168752 150.599