Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120192g00001 GAATCCATTGCTGCATCATGCAATGGATATGTCGGAGCTGATTTATGGGCTTTGTGTCGTGAAGCTATCAAATCTGCAATTAGAAGGTCTTTAATTGCAAAGAAAGATGTCAAAAAAGACTCTAGTTTAACGATGGAAGATTGGAAGAATGCAAGCTCTCTTGTTCAACCAAGTATAACAAGAGGCATTACTGTGGAAATTCCCGATGTGACTTGGAACGATATTGGTGGATTGAAAGACGTGAAGACAAAGCTCAAGCAAGCTGTTGAGTGGCCTATGAAGCATCCTGCTGCGTTTTCAAGATTGGGAATAACCCCTAATCGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACTCTTGCTAAAGCTGCTGCAAATGCTGCTAATGTTCCCTTCTTTTCCTTGAGGTTTGAATAA 426 0.4155 ESIAASCNGYVGADLWALCREAIKSAIRRSLIAKKDVKKDSSLTMEDWKNASSLVQPSITRGITVEIPDVTWNDIGGLKDVKTKLKQAVEWPMKHPAAFSRLGITPNRGILLHGPPGCSKTTLAKAAANAANVPFFSLRFE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120192g00001 141 PANTHER AAA-FAMILY ATPASE 2 138 - -
Trme120192g00001 141 Pfam ATPase family associated with various cellular activities (AAA) 110 138 IPR003959 GO:0005524|GO:0016887
Trme120192g00001 141 Gene3D - 1 58 - -
Trme120192g00001 141 Gene3D - 59 141 IPR027417 -
Trme120192g00001 141 Pfam AAA+ lid domain 2 48 IPR041569 -
Trme120192g00001 141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 138 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120192g00001 Trme-Chr120192 3 513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120192g00001 32 139 Calmodulin-binding Proteins AT3G56690 43.519 2.46e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120192g00001 - - qsu:111986565 187.193