Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120189g00001 ATGGCTTCAGATGCGGCGGCGACAGCGGAAGCAGCGGTTGTGATGCAAATGGAGCAAGAGAGAGAATTAGAAGAAAAGGTGAAGAGAGCACAAGTTGCGAAGAGTGGGAGTTTAATATTCTGTGCGGGTGAATCGCAGGTGTATACGCTGGACCAGTTGATGAAAGGATCTGCGGAGCTTTTAGGTAGAGGGTGTTTGGGAACAACTTATAAAGCAGTGCTTGATAACCGTTTGATTGTAACAGTGAAGCGTCTTGATTGTGGGAAAATGGGGGTGCACGTTAATAAGGATGTATTTGAGCGTCACATGGAATCAGTCGGTGGTCTTCGTCATCCAAATTTGGTTCCTCTAAGAGCTTATTTTCAGGCTAATCAAGAGAGATTAATTATCTATGATTATCAGCCTAATGGCAGTTTATTCTCCCTCATACATG 433 0.4411 MASDAAATAEAAVVMQMEQERELEEKVKRAQVAKSGSLIFCAGESQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRLDCGKMGVHVNKDVFERHMESVGGLRHPNLVPLRAYFQANQERLIIYDYQPNGSLFSLIH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120189g00001 144 Gene3D Phosphorylase Kinase; domain 1 15 133 - -
Trme120189g00001 144 ProSiteProfiles Protein kinase domain profile. 55 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme120189g00001 144 Pfam Protein kinase domain 59 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme120189g00001 144 SUPERFAMILY Protein kinase-like (PK-like) 59 144 IPR011009 -
Trme120189g00001 144 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 144 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120189g00001 Trme-Chr120189 34 466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120189g00001 19 144 Receptor kinase-like Gene Family AT5G43020 72.222 1.59e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme120189g00001 Pkinase 3.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme120189g00001 - - cam:101511242 264.618