Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme120074g00001 CTTCGCGTTGGCGCTGATCAATCCGTCATCAACCGCTGCAAAATTGATGCATTTCAAGACACACTCTATGCACACTCCAACCGGCAATTTTACCGTGACTCCTACATTACTGGTACCGTTGACTTCATCTTTGGAAATGCAGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNTGAGCAACCAAAAAAACATGGTCACAGCCCAAGGTCGAGAAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAATGTAACATAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCACCATCAAAACATACCTCGGCCGCCCATGGAAGAAATACTCCAGGACAGTTGTGCTGCAATCCGTCGTGGACGGCCACATTGACCCGGCAGGATGGGCTGAATGGGATGCCGCAAGCAAGGACTTTCTCCAAACATTGTATTACGGAGAGTACTTGAACAGTGGAGCAGGTGCTGGTACCAGCAAGAGAGTAACTTGGCCTGGTTTTCATATCATCAAAAGTGCTGCAGAGGCTAGCAAGTTTACAGTAGCACAACTCATCCAAGGAAATGTTTGGTTGAAGAATACTGGAGTGGCCTTCATCGAAGGTCTGTAG 618 0.4482 LRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAXXXXXXXXXXXXXXSNQKNMVTAQGREDPNQNTATSIQQCNIIPSSDLKPVQGTIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYLNSGAGAGTSKRVTWPGFHIIKSAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme120074g00001 205 Coils Coil 202 205 - -
Trme120074g00001 205 SUPERFAMILY Pectin lyase-like 1 204 IPR011050 -
Trme120074g00001 205 ProSitePatterns Pectinesterase signature 2. 36 45 IPR033131 -
Trme120074g00001 205 PANTHER PECTINESTERASE 1 195 - -
Trme120074g00001 205 Pfam Pectinesterase 1 191 IPR000070 GO:0030599|GO:0042545
Trme120074g00001 205 Gene3D - 1 205 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme120074g00001 Trme-Chr120074 2 619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme120074g00001 1 205 Carbohydrate Esterase AT1G11580 65.534 2.92e-93 281