Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme119620g00001 ATGCTGAATTTGAGAACAGAATTCAGCAGTGAAGTCGAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAGCTACTTGGTTATATTGACAAAGGAAACGAACGTATCCTTATTACGGAGTTTGTGCCAAATGGTACTCTTCGAGAACATTTGGATGGTTTGCGTGGAAAAATTCTGGATTTCAATCAGCGCCTGGAAATCGCAATTGATGTTGCTCATGGATTGACCTATCTGCATCTGTATGCAG 250 0.412 MLNLRTEFSSEVELLAKIDHRNLVKLLGYIDKGNERILITEFVPNGTLREHLDGLRGKILDFNQRLEIAIDVAHGLTYLHLYA 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme119620g00001 83 Pfam Protein tyrosine and serine/threonine kinase 5 80 IPR001245 GO:0004672|GO:0006468
Trme119620g00001 83 SUPERFAMILY Protein kinase-like (PK-like) 4 80 IPR011009 -
Trme119620g00001 83 Gene3D Transferase(Phosphotransferase) domain 1 3 83 - -
Trme119620g00001 83 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 6 81 IPR047117 -
Trme119620g00001 83 ProSiteProfiles Protein kinase domain profile. 1 83 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme119620g00001 Trme-Chr119620 85 577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme119620g00001 7 81 Receptor kinase-like Gene Family AT2G14440 55.263 5.57e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Trme119620g00001 PK_Tyr_Ser-Thr 4.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme119620g00001 - - gmx:100305423 159.458