Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11961g00001 GCAACTTCTAACATTGAGCCACTCACATGGAAAATCCGAATGAAAATAGCTCTTGATGTTGCTAAGGGTCTTGCATATCTTCATAGTGATGAAGTGAATGTTAGACTTGGAGACCCTAGAACTTCTAAAATAATCTTGATTGATTCTAATCACAATGCAAAACTATATAATTTTGCTATGATAACATCATATGAAGATACGACGTCCGATGACCCAGATATGAATCATATGATATATCAGCGAGAGAGAGGCTCCCAAACATACACGGCACCTGAGTTTACAGGTGCCCTAAGGAAAGAGGGTGATGTATACAGTTTTGGCGTTGTTCTACTGGAAATTATGTTAGGAAAACGCGCATATGATAGTAGCAGGCCAGTTCGGAAACGTAATTTAGTTGAATGGGTCAAGCCATTACTTATCAGCATTAGCAAACACAAGACCTCTGAAAACATGGATGATCTTATNAGGCCAGTTCGGAAACGTAATTTAGTTGAATGGGCCAAGCCATTACTTATCAGCATTAGCAAACACAAGACCTCTGAAAACATGGATGATCTTATAGAAGGACAATATTTGTTGCCTGAAGCAATGAAAGTAGCTCACATTGTAATTCAATGCCTGTCTAATATACCAGAAGATAGACCAAACATGGATGAGGTG 660 0.3864 ATSNIEPLTWKIRMKIALDVAKGLAYLHSDEVNVRLGDPRTSKIILIDSNHNAKLYNFAMITSYEDTTSDDPDMNHMIYQRERGSQTYTAPEFTGALRKEGDVYSFGVVLLEIMLGKRAYDSSRPVRKRNLVEWVKPLLISISKHKTSENMDDLXRPVRKRNLVEWAKPLLISISKHKTSENMDDLIEGQYLLPEAMKVAHIVIQCLSNIPEDRPNMDEV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11961g00001 220 Pfam Protein kinase domain 14 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11961g00001 220 PANTHER OS01G0588500 PROTEIN-RELATED 155 220 - -
Trme11961g00001 220 Gene3D Transferase(Phosphotransferase) domain 1 2 220 - -
Trme11961g00001 220 SUPERFAMILY Protein kinase-like (PK-like) 7 220 IPR011009 -
Trme11961g00001 220 ProSiteProfiles Protein kinase domain profile. 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11961g00001 Trme-Chr11961 753 1586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11961g00001 7 220 Receptor kinase-like Gene Family AT4G02010 32.870 3.36e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme11961g00001 Pkinase 2.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11961g00001 - - var:108326804 167.162