Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme119527g00001 AATCTTAAGCTCAATCAGCTGAACTTGTCGTATAATCGTCTTTCGGGAGAACTTCCTCCTCAGTTGGCTAAGGAAATGTACAAGTCTAGTTTCCTTGGTAATCCTGGTTTGTGTGGAGATTTGAAAGATAATGTCATTGGAAGTGGTTCATCCGGGAAGGTTTACAAGGTTGTACTTAATAGTGGAGAAGCTGTTGCTGTGAAGAAGATATGGGGAGGTGTTAGGAAGGAAGTGGAGAGTGGAGATGTCGAGAAAGGCAGGGTTCAAGACAATGCTTTTGATGCAGAGGTTGAAACTCTAGGAAAAATCAGACACAAGAACATTGTCAAGCTATG 335 0.4209 NLKLNQLNLSYNRLSGELPPQLAKEMYKSSFLGNPGLCGDLKDNVIGSGSSGKVYKVVLNSGEAVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme119527g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 43 111 IPR011009 -
Trme119527g00001 111 Gene3D Ribonuclease Inhibitor 2 44 IPR032675 -
Trme119527g00001 111 Gene3D Phosphorylase Kinase; domain 1 45 111 - -
Trme119527g00001 111 ProSiteProfiles Protein kinase domain profile. 40 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme119527g00001 111 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Trme119527g00001 111 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme119527g00001 Trme-Chr119527 59 621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme119527g00001 1 74 Receptor kinase-like Gene Family AT1G28440 57.895 3.09e-19 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme119527g00001 ABC1 0.00022 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme119527g00001 - - gmx:100819887 129.413