Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11950g00001 TATGAAAGGCTGCTTAGGACACAGGATGATTTTGTCTGGTCTGTTGATACTGCTTTTGTAGGCCGTTTCATCATCGATGTTGAGTTTCTTGATTTGAAGATTTTCCATATGAATGGTGGAGAACCTAGTTCTGTATGGTCATCTGATGGAAATTTGCAATGCAAAGAAGCTCAAAGAAGTACTCTCCAATGCCTATCTCGCATGCTCGATGAGGCTATACATGCTGACCTAACCATTATCACTGCCGATGGTACCTTAAGAGCTCACAAAGCAATTTTGTCCGCGAGTTCCCCCGTGTTTCAAAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCGTCAACAATCCATATTGAAGACATGTCACTTGAATCATGCACTGCTCTTCTAAGTTACTTGTATGGAGCAATTAAACAAGAAGATTTCCGGAAACACTGTCTTGCATTGCTCGGAGCAGCCAATAAGTATGATATTGGTAGCCTGAAAGACTTATGTGAGGAAAACCTTCTTGAATATATTAACTCAGACAATGTTCTTGAGATGCTAAATGAGGCTTGGTTTTATCAATTACACAAGTTAAAGAAAGGATGTTTAACATTCTTATTTGAATTTGGTAAAATATATGATGTTAAAGATGATGAAATAAATAACCTTTTCCAGCATGCAGATAGGGAGCTAGTGATGGAAATGTTTCAGGTGATGCTTACAATTTCCAACCCAGAATAG 726 0.3829 YERLLRTQDDFVWSVDTAFVGRFIIDVEFLDLKIFHMNGGEPSSVWSSDGNLQCKEAQRSTLQCLSRMLDEAIHADLTIITADGTLRAHKAILSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCTALLSYLYGAIKQEDFRKHCLALLGAANKYDIGSLKDLCEENLLEYINSDNVLEMLNEAWFYQLHKLKKGCLTFLFEFGKIYDVKDDEINNLFQHADRELVMEMFQVMLTISNPE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11950g00001 241 SMART BTB_4 75 173 IPR000210 GO:0005515
Trme11950g00001 241 Pfam BTB/POZ domain 68 170 IPR000210 GO:0005515
Trme11950g00001 241 PANTHER OS08G0495500 PROTEIN-RELATED 1 240 IPR044714 -
Trme11950g00001 241 CDD BTB_POZ_ZBTB_KLHL-like 74 156 - -
Trme11950g00001 241 SUPERFAMILY POZ domain 55 170 IPR011333 -
Trme11950g00001 241 Gene3D Potassium Channel Kv1.1; Chain A 45 202 IPR011333 -
Trme11950g00001 241 ProSiteProfiles BTB domain profile. 75 134 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11950g00001 Trme-Chr11950 194 1475 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme11950g00001 BTB 6.9e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11950g00001 K10523 - gmx:100787262 389.808