Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme119330g00001 GATGAAAGAGAGCTTAAAAGACAACGGCGGAAACAGTCCAATAGAGAATCTGCTCGGAGATCCAGGCTGCGCAAGCAGGCCGAGTGCGATGAGCTAGCACAGCGTGCTGATGTTTTGAAAGAAGAAAATGCTTCACTCCGATTAGAA 147 0.483 DERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRLE 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme119330g00001 49 SUPERFAMILY Leucine zipper domain 5 48 IPR046347 GO:0003700|GO:0006355
Trme119330g00001 49 Coils Coil 22 49 - -
Trme119330g00001 49 Gene3D - 5 49 - -
Trme119330g00001 49 FunFam BZIP transcription factor 4 49 - -
Trme119330g00001 49 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 9 24 IPR004827 GO:0003700|GO:0006355
Trme119330g00001 49 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 49 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trme119330g00001 49 MobiDBLite consensus disorder prediction 1 27 - -
Trme119330g00001 49 SMART brlzneu 2 49 IPR004827 GO:0003700|GO:0006355
Trme119330g00001 49 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 4 49 IPR004827 GO:0003700|GO:0006355
Trme119330g00001 49 CDD bZIP_plant_GBF1 7 47 IPR045314 GO:0003700|GO:0006355
Trme119330g00001 49 Pfam bZIP transcription factor 2 47 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme119330g00001 Trme-Chr119330 16 257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme119330g00001 1 49 bZIP Transcription Factor Family AT2G35530 87.755 1.52e-23 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme119330g00001 bZIP_1 1.1e-17 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme119330g00001 K09060 - sly:101253816 92.8189