Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11927g00001 ATGAACATTGTTCCTACAAGAGTCATGGGTACTTATGGTTATAGTGCTCCTGAGTATGTAAGAACAGGTAACCTCACTTTGAAGTCAGATGTATACAGTTTTGGAGTTGTCTTGCTAGAGCTCATAACTGGAAGACGAGCTGTTGACACCACAAGATCGCACGACGAGCAAAATCTAGTTTCATGGGCACAACCAATATTTAGAGATCCAAAAAAATATGGAGATTTGGCTGATCCAAATCTCGGTACAAATTACCCGGAAAAGGATCTGAATCAAGTTGTTGCAATTGCAGCCATGTGCTTACAGGAGGAATCAGCAGCGCGNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCCAACTCCACCTCCCAAATCCACCTCCCAGAAGACTGTTTCCACTGCCGACGAAAGTTCTGATGAAGAGCGTTCGGATCACGGGGACAATCATGATATTGCAGCAGCTAGTGGAAAATACGAAGAATGTGATGATGCATCAGACAGTGAAAGTGATTATTATGAGGACGAAAACCAACATGATTATAGTCCACAAGATGGTAAAGAAACAAAGGAATTCTACTCCAAATCAAGCAACAAAAGCGGTACCAAATCAAAGAAAGGTTCCAGTTCCAAAAAGCATGGGGCGGATGGAAGTTTAACTCAGAAAAGCAGTAAGAAGAGCAGTAAAAAATCTTCTGCAAGATTTGCAAGTAAATCATCTGATAGCAGCAGCGACGAGGAGTCACGGGATGGAGGTGTTCTTCTCAAGCGTGGTGACAGTAGGCCATCAAATGGTGGAAATGGATATTCTTTTGGCCTAACAAGCAGTGATAGTGGGGAAGTATCACGTTCAGATGTTCATCATTTTGATCGCATGAGCACGGGGACATCCGAGGAGGGAAGTTTTCACCATTTAGAACGTTCCAGCAGCAGAGGATCAGATGAGGGAAGTGTTCATTCATGA 1008 0.3998 MNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRSHDEQNLVSWAQPIFRDPKKYGDLADPNLGTNYPEKDLNQVVAIAAMCLQEESAARXXXXXXXXXXXXXXXXXXXXXXXXXXPTPPPKSTSQKTVSTADESSDEERSDHGDNHDIAAASGKYEECDDASDSESDYYEDENQHDYSPQDGKETKEFYSKSSNKSGTKSKKGSSSKKHGADGSLTQKSSKKSSKKSSARFASKSSDSSSDEESRDGGVLLKRGDSRPSNGGNGYSFGLTSSDSGEVSRSDVHHFDRMSTGTSEEGSFHHLERSSSRGSDEGSVHS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11927g00001 335 MobiDBLite consensus disorder prediction 118 335 - -
Trme11927g00001 335 MobiDBLite consensus disorder prediction 315 335 - -
Trme11927g00001 335 MobiDBLite consensus disorder prediction 190 209 - -
Trme11927g00001 335 PANTHER OS07G0668900 PROTEIN 4 109 - -
Trme11927g00001 335 SUPERFAMILY Protein kinase-like (PK-like) 4 112 IPR011009 -
Trme11927g00001 335 MobiDBLite consensus disorder prediction 255 271 - -
Trme11927g00001 335 Gene3D Transferase(Phosphotransferase) domain 1 2 116 - -
Trme11927g00001 335 MobiDBLite consensus disorder prediction 150 178 - -
Trme11927g00001 335 Pfam Protein kinase domain 6 57 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11927g00001 335 MobiDBLite consensus disorder prediction 278 295 - -
Trme11927g00001 335 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11927g00001 Trme-Chr11927 175 1495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11927g00001 4 108 Glycoside Hydrolase AT3G07070 71.429 9.49e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trme11927g00001 Pkinase 4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11927g00001 - - gmx:100807682 248.825