Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme119243g00001 ATGAACGGTGGAGAGATAGTGGAAGTTGACGGCGGTCACATTATAAGGTCAAGAGGTAGAAAAGACCGTCATAGTAAAGTTTGCACGGCGAAAGGGCCGAGAGACAGACGTGTCCGTCTCTCGGCCCATACCGCCATTGAATTCTATGATGTTCAAGATCGATTGGGCTTTGATAGGCCCAGTAAAGCCCTTGATTGGCTTATTAATAAAGCTAAGCCCGCCATCGATCAACTCGATCAACTTCCTCCATGGAAACCAANNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGTTTCGTTTTCTTCAGAATTTTAACAGCAATAGCAACGGTTTTGTTCCGTTTGAAAGTGAAATTGGTGAAACGACGTCGTCTTCGCCGATTCAGTTTCCTGATTTGCTTTCGAGAACGAACAGTAATGATTTGAGGCTTTCGTTGCAACA 500 0.366 MNGGEIVEVDGGHIIRSRGRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKALDWLINKAKPAIDQLDQLPPWKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRFLQNFNSNSNGFVPFESEIGETTSSSPIQFPDLLSRTNSNDLRLSLQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme119243g00001 166 ProSiteProfiles TCP domain profile. 20 78 IPR017887 -
Trme119243g00001 166 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 87 IPR005333 GO:0003700
Trme119243g00001 166 Pfam TCP family transcription factor 19 80 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme119243g00001 Trme-Chr119243 1 500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme119243g00001 4 86 TCP Transcription Factor Family AT3G15030 85.542 2.15e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trme119243g00001 TCP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme119243g00001 - - vvo:131653439 228.024