Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme119228g00001 CATCCTAGCAAGCTCACAAAAGAGAATTCAAATGTGCAACAAGAGTTGTTAGAAACATGTGACAGTGATGAAGAAGGAGATAATGAAACTGAAGTAGATTATGAACCTGATCTCAAGAGAAGAAACACAGAAGTTAGGCTCCTAGATCCATCCTTTTCACATGGGACTGTCTCAAAGCCTAAAATCATTGTACAAACAACAAGTGATGTGGATCTCTTAGAGGACGGATATAGATGGCGTAAATATGGCCAGAAAGTTGTCAAAGGCAACCCATATCCAAG 281 0.395 HPSKLTKENSNVQQELLETCDSDEEGDNETEVDYEPDLKRRNTEVRLLDPSFSHGTVSKPKIIVQTTSDVDLLEDGYRWRKYGQKVVKGNPYP 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme119228g00001 93 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 93 IPR044810 GO:0003700
Trme119228g00001 93 ProSiteProfiles WRKY domain profile. 68 93 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme119228g00001 93 Gene3D WRKY domain 60 93 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme119228g00001 93 Pfam WRKY DNA -binding domain 74 93 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme119228g00001 93 SUPERFAMILY WRKY DNA-binding domain 65 93 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme119228g00001 Trme-Chr119228 262 626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme119228g00001 3 93 WRKY Transcription Factor Family AT2G03340 61.224 2.25e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme119228g00001 WRKY 9.9e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme119228g00001 - - psat:127106018 125.946