Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11917g00001 ATGGAAGAGAATGTGAAAGTGAATGAAGATGCTATTGGAAGTGATGATCATATTTTAGAGAAAAATGATTACACTACTCAAATAATGGAACATGTTGATTTTCCAAACAAGAATGAGTTGCAAATACAGCTCAAAAGGAAACTTGATGTGATAGGAGTTGAGGAAAATATAAACAAGAAATCCGAGAATCCAAAGAAAAAACCCCGCGTTTCAAAAGATGGGCAAGGATGCATGAAAAATGCAAGGTCAAAGAAGAACTTGCAAAAAGTTGCTAGCAATGAAGAGATTGATAATGGAGAATCAAATGGAAATAGTTCTAGTAGTAACATTTATGAGGATGATAATGGTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTTTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAATCCTACAAAATCTTGTACCAAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTGCAAGTTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACATTGGACTCAATCTCAACAATTCTCTACCACTATGA 669 0.3543 MEENVKVNEDAIGSDDHILEKNDYTTQIMEHVDFPNKNELQIQLKRKLDVIGVEENINKKSENPKKKPRVSKDGQGCMKNARSKKNLQKVASNEEIDNGESNGNSSSSNIYEDDNGSQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLNLNNSLPL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11917g00001 222 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 210 - -
Trme11917g00001 222 MobiDBLite consensus disorder prediction 57 73 - -
Trme11917g00001 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Trme11917g00001 222 Gene3D - 140 196 IPR036638 GO:0046983
Trme11917g00001 222 MobiDBLite consensus disorder prediction 81 142 - -
Trme11917g00001 222 Pfam Helix-loop-helix DNA-binding domain 148 188 IPR011598 GO:0046983
Trme11917g00001 222 CDD bHLH_AtIND_like 139 201 - -
Trme11917g00001 222 SMART finulus 144 193 IPR011598 GO:0046983
Trme11917g00001 222 MobiDBLite consensus disorder prediction 57 150 - -
Trme11917g00001 222 FunFam Basic helix-loop-helix transcription factor 139 196 - -
Trme11917g00001 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 203 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11917g00001 Trme-Chr11917 222 1455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11917g00001 113 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 81.553 8.32e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme11917g00001 HLH 5.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11917g00001 - - cam:101488422 270.011